Ribonucleic Acid Virtual Laboratory for Sequence Analysis, Structure Prediction, and Databases

PseudoBase++ Database

PseudoBase++ is a searchable up-to-date database of the PseudoBase pseudoknots wrapped by a versatile, user-friendly interface providing scientists with a powerful engine to access, search, select, and sort data based on different fine-grained criteria. The PseudoBase++ interface allows scientists to visualize selected structures with PseudoViewer, to map existing sequences to GenBank, and to insert new pseudoknots to the PseudoBase dataset through a syntax-controlled interface that prevents structural error for long sequences. PseudoBase++ is part of the RNAVLab project a virtual laboratory for the analysis of RNA secondary structures and serves the specific purpose of facilitating analysis of pseudoknots.

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This work is supported by the BBRC Grant 5G12MD007592
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