Download and installation instructions:
README.txt
RNAVLab class files, MySQL example table, and example input files:
rnavlab.tar.gz
RNA Secondary Structure Analysis with RNA Segmentation and Assembly:
RNASSA 2.0.150128 (zip file; Java & R required); Release Notes; PDF Manual
A Bioinformatics Tool for RNA Segmentation:
Segmenta 2.0.150303 (zip file; Java and R required); Update Notes
A Bioinformatics Tool for Finding Sequence Inversions:
InversFinder 2.0.150302 (zip file; Java and R required); Release Notes
Prediction code websites:
pknotsRG
NuPack
PknotsRE
UNAFold
For developing Java applications:
Java desktop environment for running Java
NetBeans and Java SE with JDK for Java development
Good luck...email bugs, questions, and concerns to rnavlab@utep.edu.